Human RNase L tunes gene expression by selectively destabilizing the microRNA-regulated transcriptome.

Publication Year
2015

Type

Journal Article
Abstract

Double-stranded RNA (dsRNA) activates the innate immune system of mammalian cells and triggers intracellular RNA decay by the pseudokinase and endoribonuclease RNase L. RNase L protects from pathogens and regulates cell growth and differentiation by destabilizing largely unknown mammalian RNA targets. We developed an approach for transcriptome-wide profiling of RNase L activity in human cells and identified hundreds of direct RNA targets and nontargets. We show that this RNase L-dependent decay selectively affects transcripts regulated by microRNA (miR)-17/miR-29/miR-200 and other miRs that function as suppressors of mammalian cell adhesion and proliferation. RNase L mimics the effects of these miRs and acts as a suppressor of proliferation and adhesion in mammalian cells. Our data suggest that RNase L-dependent decay serves to establish an antiproliferative state via destabilization of the miR-regulated transcriptome.

Journal
Proc Natl Acad Sci U S A
Volume
112
Issue
52
Pages
15916-21
Date Published
12/2015
ISSN Number
1091-6490
Alternate Journal
Proc. Natl. Acad. Sci. U.S.A.
PMID
26668391